Bangladesh field RNA-Seq Raw Data – April, 2016

G. O. Saunders, Diane; Win, Joe; Islam, Tofazzal; Kamoun, Sophien (2017): Bangladesh Field RNA-Seq samples – April, 2016. figshare.


Sequence reads were obtained from RNA extracted from wheat leaf blades from fields infected with wheat blast fungus in Bangladesh. For each field sample, we generated sequences for a pair of non-symptomatic and symptomatic leaf blades. To download, please click on the links on the last columns.

Sample NameLocationWheat VarietyLibrary NameENA Run Accession Lane 1ENA Run Accession Lane 2Total Read Count%Mapped to BR32
F2 (Asymptomatic)Meherpur, Sadar, Baradi(BADC)BARI Gom-25LIB21745ERR1360178 (Reads_1, Reads_2)ERR1360179 (Reads_1, Reads_2)410175020.0%
F5 (Asymptomatic)Meherpur, Sadar, AlampurBARI Gom-26LIB21746ERR1360180 (Reads_1, Reads_2)ERR1360181 (Reads_1, Reads_2)384470030.0%
F7 (Asymptomatic)Jhinaidaha, Shailokupa, Nittananda purShotapdiLIB21747ERR1360182 (Reads_1, Reads_2)ERR1360183 (Reads_1, Reads_2)448359890.0%
F12 (Asymptomatic)Jhinaidaha, Shailokupa, Nittananda purKanchanLIB21748ERR1360184 (Reads_1, Reads_2)ERR1360185 (Reads_1, Reads_2)344088240.0%
2 (Symptomatic)Meherpur, Sadar, Baradi(BADC)BARI Gom-25LIB21749ERR1360186 (Reads_1, Reads_2)ERR1360187 (Reads_1, Reads_2)371229030.8%
5 (Symptomatic)Meherpur, Sadar, AlampurBARI Gom-26LIB21750ERR1360188 (Reads_1, Reads_2)ERR1360189 (Reads_1, Reads_2)465102737.3%
7 (Symptomatic)Jhinaidaha, Shailokupa, Nittananda purShotapdiLIB21751ERR1360190 (Reads_1, Reads_2)ERR1360191 (Reads_1, Reads_2)463346720.5%
12 (Symptomatic)Jhinaidaha, Shailokupa, Nittananda purKanchanLIB21752ERR1360192 (Reads_1, Reads_2)ERR1360193 (Reads_1, Reads_2)6291089218.6%

The reads were obtained using RNA-seq technology. Library preparation and sequencing runs were performed onĀ Illumina HiSeq-2500 machines. They are paired-end reads with ~300 bp insert size.

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